cellxgene

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How to save a selected subset of cells?

1

Hello I really like your tool, but I cannot figure out how to save a selected subset of cells (or if this has been implemented). I have used the lasso...

Matthew1309

Use global.API values in `loadTextureFromUrl`

1

Instead of hard-coded string, build the URL for fetching the spatial image using global.API values. #### Reviewers **Functional:** **Readability:** --- ## Changes - modify

prete

docs: fix test pypi install command

2

#### Reviewers **Functional:** @maniarathi @seve **Readability:** --- ## Changes minor tweaks to instructions

atolopko-czi

add proper semver support to code base

3

there are several places in the python code where a semver value is interpreted, parsed, compared, etc. They are all deficient in a number of ways and could be improved...

bkmartinjr

Numbers instead of gene names shown in search bar v1.0.1 (it works in 1.0.0)

2

We noticed that when loading the same seo.h5ad (exported from Seurat object within R) with CellXGene 1.0.1 we cannot search for gene names; only numbers appear in the search bar....

aghr

I am trying to install a local galaxy with cellxgene interactive tool. When I use the default interactivetool_cellxgene.xml in galaxy 22.01 release, it pulled the docker image quay.io/biocontainers/cellxgene:0.16.2--py_0 and it...

LuciaWL001

# Background Single cell reference atlases are quickly becoming available and are resources that offer high quality single cell data that is integrated (i.e. technical noise due to batch, sequencing...

MaximilianLombardo

Allow the user to perform cell type prediction on a specified dataset using the `cellxgene` CLI , via a new subcommand.

atolopko-czi

Unloading / loading h5ad files on the fly inside cellxgene client GUI

3

**Is your feature request related to a problem? Please describe.** No **Describe the solution you'd like** I have a collection of hundred of h5ad files. Instead of spinning up hundred...

baohongz

Automatically surface & display gene markers

2

 Thanks to @sidneymbell & @batson for kicking this idea around. Seems like it could be valuable given certain constraints, will defer to them to define them and leave this...

colinmegill