empress
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biocore
A fast and scalable phylogenetic tree viewer for microbiome data analysis
One weird thing I noticed in the side panel HTML is that there are hidden `` tags that take up some space at the bottom of the sample / feature...
Generally this would be useful to see in the color and shearing layers.
Is there a reason why we are using relatively old software versions for e.g. Ubuntu, Miniconda2 instead of 3, ... ? https://github.com/biocore/empress/blob/7cd33d29331d188a784158ad7729e448cb443531/.travis.yml#L4 Shouldn't we add testing on OSX?
I thought we already had an issue for this, but apparently not! Motivation: Lots of tree figures (e.g. Figure 1a in [this paper](https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01017-w) I was reading) have a "gap" between...
Hi, I believe that it is currently not possible to make a stacked bar plots for groups of feature metadata variables. EMPress only considers one feature at a time, right?...
To draw barplots in the circular layout, EMPress uses four triangles for each tip in the tree's "bar". When there are over a couple of tips (probably somewhere in the...
Dear empress team, Thanks for your hard work with empress. My issue is how to show tip lable name on the tree plot, just like:  Thanks a lot!
Discussed with @kwcantrell earlier today. In the following function: https://github.com/biocore/empress/blob/26f1b02caa004c7db5e4e281681804b34f124622/empress/support_files/js/empress.js#L595-L598 It should be possible to rewrite the first line as ```js var numSamples = Math.floor(Math.abs(19.09859 * totalAngle)); ``` ... since...
Would make Empress usable for smartphones. Not really high priority, but it could be nice (Emperor already seems to work at least partially with smartphones, so this might go well...
Rather than coloring the nodes themselves. See, e.g., the title figure in the [phylofactor tutorial](https://docs.wixstatic.com/ugd/0119a1_5ff56560b8c74f169ce3965ba3f421df.pdf). One of the nice benefits of this is that it'd make it easier to color...