empress
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biocore
A fast and scalable phylogenetic tree viewer for microbiome data analysis
- [ ] Add support to only export the tree that's currently visible on screen. - [ ] Change the dimensions of the page in the Python code (currently 4020x4020)...
Empress is great at coloring the tree when there are comparatively few metadata categories, but if there are lots (e.g. coloring a tree by genus-level taxonomy) then it becomes really...
With a lot of the changes over the past few weeks (default node color change, leaf sorting, defaulting to not showing node circles, #373, ...) the README's screenshots are now...
It's possible for the user to press "back" on an Empress visualization, then press "forward" to return to the visualization. Due to browsers attempting to be helpful, some of the...
Yours truly forgot to update the version number in `setup.py` before doing the release, leading to some last-minute panic as we had to redo the release. It'd be nice to...
It would be good to add a persistent warning which lets users know that ignoring branch lengths could be potentially misleading.
From talking with @kwcantrell about this recently (IIRC), I don't think the actual 4020 x 4020 width x height values matter given how the Empress drawer works -- what matters...
I think this would mainly be useful for categorical feature metadata tree coloring / barplots, but it may also be useful for sample metadata barplots. Basically, this would have the...
I thought there was an open issue for this, but can't find it. Anyway, this would be useful to have: each tip (with metadata, at least) would get assigned a...
Periodically, I'll change the layout and find that I'll still need to zoom out / pan a bit in order to have the entire tree visible within the window. This...