empress icon indicating copy to clipboard operation
empress copied to clipboard

A fast and scalable phylogenetic tree viewer for microbiome data analysis

Results 100 empress issues
Sort by recently updated
recently updated
newest added

It's a bit hard to describe, but when the cursor crosses over the dividing line between Empress and Emperor while selecting samples in Emperor, the selection gets kind of messed...

bug
emperor-integration

Hi EMPeople, I think that an EMPire plot should actually show the empire (i.e. also a *territory*), in the flavour of [microreact](https://microreact.org/showcase). F

feature request

Similar to #362 -- this is handled for continuous color legends, just gotta extend it to here.

barplots

The current way (in #384) that PNG exporting is done is by passing a callback to `canvas.toBlob()`. A problem with this is that if there is a substantial gap here,...

bug

Hi, Can the types of subscriptions be cumulated? For example, to show samples containing (i) order Clostridiales (1st click' selection) and also show (i.e. cumulate) samples containing (ii) genus Prevotella...

feature request
emperor-integration
refactoring

This is a small, low-priority thing I'd like to add in to Empress later on down the line -- recording it here for future reference. We had some requests to...

good first issue
documentation

Useful for when certain tips do not have feature metadata. In practice, this will probably happen when the shear-to-table option is not used.

bug

Continuation of #370, documenting here for reference. This would be less immediately useful than clicking on a sample metadata category in Emperor, but I guess it still could be helpful...

nice to have
emperor-integration

Idea from @justinshaffer. In terms of implementation, I guess this'd just involve 1) figuring out what legends are active and 2) which the current tip / clade / barplot is...

feature request
nice to have
barplots

This came up in this morning's meeting (thank you @bextra!). The idea would be something like -- if a barplot layer using just continuous fields is selected, and clade collapsing...

feature request
barplots