empress
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biocore
A fast and scalable phylogenetic tree viewer for microbiome data analysis
I'd like to use Empress in a Snakemake pipeline (see below) but I'm running into an annoying issue. If my understanding is correct (which it could very well not be),...
~~Address #405 This PR adds a gradient color option for feature metadata (similar to gradient option for barplots). There is one small issue I wasn't sure how to resolve though...
This PR address #518 by adding the option to select the min/max values for a color gradient. See below example.  Abstracting the ColorOptionsHandler, which will make...
Noticed while working on #521 -- [this particular test](https://github.com/biocore/empress/blob/bf6f755c5187e543ff13c2c624b153fb97918b23/tests/test-barplots.js#L353-L359) was failing (it was expecting `216` coordinates, but only saw `72`). Adding log statements during debugging seemed to cause the test...
Just to track this as a separate feature, independent of #521. From @mortonjt in https://github.com/biocore/empress/issues/521#issuecomment-1128942024: > But I do want to note that discretizing colors in heatmaps is actually the...
Hi! I really appreciate empress. I'm wondering if it would be possible to introduce one of my favorite features from emperor. I really liked the ability to export/import a settings...
It would be great if there was support for diverging colormaps (vmin, vcenter and vmax) as done in matplotlib's [TwoSlopeNorm](https://matplotlib.org/stable/api/_as_gen/matplotlib.colors.TwoSlopeNorm.html#matplotlib.colors.TwoSlopeNorm). I think this use-case will become increasing common for publishing...
This sorts all drop down menus and the node select menu. This should hopefully make it much easier to find things :smile:
Hi there, thanks for developing empress... it's great! However, I can't seem to find how to format the feature metadata tsv file required by parameter --feature-metadata. I imagine that node...
