M Bernt
Not sure if `planemo test` considers `--test_timeout` The following are the longest test times for a recent IUC job where we have a test timeout of 900: ``` 5381.463400363922, breseq,...
`planemo test` is currently successful if there are errors like: - `Exception: The tool XYZ targets version 21.09 of Galaxy, you should upgrade Galaxy to ensure proper functioning of this...
Previously the log contained info about which test is currently executed: `( TOOL_ID ) > Test-NUM ... ` this seems missing now.
When using `--updated_sam` and `--ncpu 2` then I observe the following error ``` | 2022-07-21 15:09:23 INFO Creating updated SAM file... (from run in telescope_assign.py:260) | [E::hts_open_format] Failed to open...
Seems that when one uses a bed file as input gff/gtf output has the string "BED" as name in all lines.
Just noticed that 1.4.3 still fails for input that is symlinked: With `mono` 6.12.0.90-h780b84a_0 (from conda-forge) I get ``` 2024-04-12 13:30:02 ERROR Unable to access the RAW file using the...
When running maxquant I got: ``` .NET Core 3.1 needs to be installed. Please visit https://dotnet.microsoft.com/download/dotnet-core/3.1 and install the SDK x64. ``` TODO - [ ] test this manually (within...
Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...
We just added this repo to the planemo monitor https://github.com/galaxyproject/planemo-monitor/pull/43 and I noticed that conda struggles to find a `blast+` package
**Describe the bug** Latest version of the `parallel accession download` [workflow](https://dockstore.org/workflows/github.com/iwc-workflows/parallel-accession-download/main:main?tab=versions) is 0.1.11 This and several others are not shown in the UI Edit (added the wrong screenshots first): ![Screenshot...