M Bernt

Use proper tmpdir for jobfiles

2

While doing workflow tests I noticed that `json` files are created in the code dir. Thought it might be better to use a proper temporary dir.

I wanted to debug a failed invocation and wanted to download everything for local testing. Like so ``` planemo workflow_test_init --from_invocation --galaxy_url --galaxy_user_key ``` This failed when downloading the failed...

xref https://github.com/galaxyproject/galaxy/pull/17081

**Describe the bug** During planemo test runs on github CI we have quite a few jobs (approx a dozen on IUC) failing with `Input staging problem: History not found` **Galaxy...

Extended container support

10

- [x] use yaml based job config (simplifies future extensions) - [x] allow singularity in addition to docker - → tool developers do not need to install docker - [x]...

`planemo test` parameter `--job_output_files` seems unused

1

at least grep only shows me the parameter definition. ping @wm75

I am wondering what this virtual appliance thing is anyway for many years? Was wondering if we can remove this, ie. `docs/writing_appliance.rst` ..

e.g. to clean histories after tests: https://github.com/galaxyproject/planemo-ci-action/pull/37#issuecomment-1651161963

Planemo test is ignoring `--failed`

4

planemo, version 0.75.2 I guess this came with https://github.com/galaxyproject/planemo/pull/1232 Also it seems that `GalaxyTestCommand` is not used anymore

Most users will be interested in the failed or errored tests when looking at the html report. So its a little annoyance that one needs to do 2 mouse clicks...