planemo
planemo copied to clipboard
planemo test ignoring `--test_timeout`?
Not sure if planemo test considers --test_timeout
The following are the longest test times for a recent IUC job where we have a test timeout of 900:
5381.463400363922, breseq, 0
4196.358647584915, mothur_align_seqs, 3
2054.1960706710815, data_manager_metaphlan_download, 0
762.1416461467743, pyega3, 4
724.9553120136261, repeatmodeler, 0
679.3012344837189, trinotate, 0
657.493992805481, orthofinder_onlygroups, 8
650.9388360977173, trinotate, 1
642.6715126037598, mitos2, 0
597.879430770874, busco, 6
might also be due to:
https://github.com/galaxyproject/galaxy/pull/14667
Was thinking to add this to the CI / PR statistics output. This was the used command:
jq '.["tests"][]["data"] | "\(.time_seconds), \(.tool_id), \(.test_index)"' tool_test_output.json | sed 's/"//g' | sort -t ',' -n -r | head