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planemo test ignoring `--test_timeout`?

Open bernt-matthias opened this issue 3 years ago • 0 comments

Not sure if planemo test considers --test_timeout

The following are the longest test times for a recent IUC job where we have a test timeout of 900:

5381.463400363922, breseq, 0
4196.358647584915, mothur_align_seqs, 3
2054.1960706710815, data_manager_metaphlan_download, 0
762.1416461467743, pyega3, 4
724.9553120136261, repeatmodeler, 0
679.3012344837189, trinotate, 0
657.493992805481, orthofinder_onlygroups, 8
650.9388360977173, trinotate, 1
642.6715126037598, mitos2, 0
597.879430770874, busco, 6

might also be due to:

https://github.com/galaxyproject/galaxy/pull/14667

Was thinking to add this to the CI / PR statistics output. This was the used command:

jq '.["tests"][]["data"] | "\(.time_seconds), \(.tool_id), \(.test_index)"' tool_test_output.json | sed 's/"//g' | sort -t ',' -n -r | head 

bernt-matthias avatar Nov 28 '22 10:11 bernt-matthias