M Bernt

Results 228 issues of M Bernt

It would be nice to have to possibility to install a tool by specifying a version (then the latest revision of the version should be installed / updated). See also...

Using this workflow as sub-workflow should simplify workflows. I think that having this might be cool irrespective of if we do https://github.com/galaxyproject/tools-iuc/pull/5713 + https://github.com/galaxyproject/galaxy/pull/17271 -- which do more or less...

Still thinking about if extending the fasta splitter tool would be better.

values are the defaults that will be introduced in https://github.com/galaxyproject/planemo-ci-action/pull/23 but I think its a good idea to add them here anyway .. just in case anyone uses the repo...

We may make this repo a template repo, or create one.. Maybe later.

Seems that `test/source_files` does not work in mulled tests (the conda-build tests seem to work). I guess that one would need to add `--test-files` here: https://github.com/bioconda/bioconda-utils/blob/1734a52e0a471266886092eafde864de70e0e0f5/bioconda_utils/pkg_test.py#L151 ..

Just on a bad internet connection .. was wondering if it would be an option to add an argument that allows to skip downloading the latest infos from the conda...

Will add commits as they come. Early feedback is welcome.

one more request on this way .. the tool I want to wrap uses the parent feature of subparser, i.e. it defines subparsers that are reused in many other subbarsers....

GalaxyXML

Here some possible improvements (for now I have a solution for all of them): - [x] remove spaces in tool name (problem comes for subcommands) - [x] ` `