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Assertion failure in CountPairedInfo()

3

I reproducibly get the below error with 3.14.0 and 3.14.1: ``` 0:00:41.211 85M / 6G INFO General (path_extender.hpp : 894) Processed 150 paths from 493 (30%) spades-core: /opt/conda/conda-bld/spades_1596699678396/work/src/common/modules/path_extend/paired_library.hpp:131: double path_extend::PairedInfoLibraryWithIndex::...

epruesse

### Description of bug Dear sir, I failed to install cloudSPAdes: early access version on my ubuntu system(Ubuntu 20.04.2 LTS (GNU/Linux 5.4.0-74-generic x86_64)) with following message. Can you help me...

victor0104

Segmentation fault in spades-hammer (error -11)

26

Spades does not run on my local Laptop. The spades-hammer step exits with error code -11 (Segfault) Similar issue: https://github.com/ablab/spades/issues/191 To narrow it down I ran the following Spades config...

caspargross

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Thanks for amazing sofware. I'm doing some post-processing...

schorlton

spades --continue converting reads to binary every time

1

### Description of bug When running spades (rnaspades in my case) to continue interrupted assembly, I see that it always first converts reads to binary, even though binary reads are...

milenovic

Recover rDNA from metagenomes

2

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. rRNA and tRNA are thought to be difficult...

SilasK

Spades is printing errors to stdout

1

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Spades prints errors not caught by argparse to...

luederm

metaspades error code -11

5

Hi guys, I've run into an issue running SPAdes in metagenomic mode. Filtering singleton k-mers of the forward reads takes only a few minutes, but then SPAdes gets stuck on...

metalichen

Trusted contigs with metaSPAdes

6

Hi, are there any plans to implement the use of trusted contigs with metaSPAdes? If not, why is it not possible? Cheers Oskar

ohickl

metaSPAdes errors during assembly on only *two specific datasets*: spades-hammer exited with error code -11 (terminated by segfault)

2

Hi, Similar to issue #191 , during assembly of two metagenomic samples, metaSPAdes errors and cannot continue due to spades-hammer segmentation fault during the run. For some reason it only...

mshamash