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ablab
Some issues with running SPAdes
Description of bug
Dear author, thank you for developing such excellent software, which helps us a lot in genome assembly. Now I have a problem with SPAdes automatically setting my KMER values to 21, 33, 55, 77. There was nothing wrong with the first three K values, but I got an error when I ran to a K value of 77, which is attached to the spades.log below. I think it may be the memory problem, so I have two questions now. The first one is whether my judgment of the error is accurate and whether it is caused by the memory. The second question is whether I can directly start running the program with K value of 77. What is the command line like? Thank you for your reply.
spades.log
params.txt
SPAdes version
SPAdes version: 3.15.4
Operating System
OS: Linux-3.10.0-1160.49.1.el7.x86_64-x86_64-with-centos-7.9.2009-Core
Python Version
Python version: 2.7.5
Method of SPAdes installation
manual
No errors reported in spades.log
- [X] Yes
Hello
Your SPAdes job was killed. Likely more information could be found in your system log. You can restart your SPAdes job from the last checkpoint using --continue option. Running a single k-mer length is not recommended
