James Ferguson
James Ferguson
Hey, i'd try with python/3.9.9 first, as I recommend 3.7, the other 2 won't work so well. The biggest issue is the versions of the other packages. Things have gotten...
Could you please do a `pip freeze` So I can see the versions of everything? For vbz plugin, it's managed by ONT. They have a number of ways to install...
Okay try downgrading numpy by removing it and installing 1.20 again. It probably grabbed a higher version when doing something else. Then do numba install again. By any chance can...
Oh and try these instructions for vbz https://github.com/nanoporetech/vbz_compression/tree/master/python/pyvbz
Hey, So i think that is an issue with h5py. See this issue reply for a potential fix: https://github.com/Psy-Fer/deeplexicon/issues/13#issuecomment-876567110
Umm, i'm not sure what that error means, I've not seen that error before. I'll have to have a look into it.
I think that was added (meant to be on both), to avoid a zero divide error to make it 1 indexed. Sorry been a while since I wrote that.
Or, perhaps an explanation of how to do a --user install that doesn't, for example, use .local/bin (can we change this to isolate virtual environments?) that can use a python3...
Ahh absolute legend. I'll give that a go and let you know how I get along. Thanks!
Hello okay so after hacking at the python2 and python3 virtual environments for a bit, I added the following to the python3 activate script ``` VIRTUAL_ENV="/home/jamfer/work/sandy363" export VIRTUAL_ENV _OLD_VIRTUAL_PATH="$PATH" PATH="$VIRTUAL_ENV/bin:$PATH"...