python-neo

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Creating an ImageSequence object with the TiffIO currently defines the origin in the upper left corner of the image. This might be unintuitive for some users (including me). To move...

rgutzen

[NeuroScopeIO] NeuroScopeIO can not handle file with missing channels but NeuroScope can

1

Hi all, I have some .dat files under the NeuroScope format for which some channel have been deleted for quality control. I find that NeuroScopeIO can not open these files...

madwilliam

time_slice() behaves differently for AnalogSignal and IrregularlySampledSignal

1

``` from neo import AnalogSignal, IrregularlySampledSignal from quantities import ms, mV import numpy as np sig = AnalogSignal(np.arange(50) * mV, sampling_period=1 * ms, t_start=0.1 * ms) irr = IrregularlySampledSignal(sig.times, np.arange(50)...

apdavison

[Feature] Make neo.core.Epoch more useful

1

Hey! I have been working with neo epoch for annotating behavioral states of a monkey and noticed that there are some few functionalities that would have made my life so...

morales-gregorio

Time scale issue in merged .plx-files

4

Using PlexonIO for opening .plx-files which are the result of merging multiple .plx-files in PlexUtil leads to incorrent events time stamps. For example, I have 2 files recorded with the...

sykesva

[NeuralynxIO] Update .ncs file reading

8

Hi! While working with NeuralynxIO in different datasets I came across a few bug/missing features, which I think will be useful (necessary) additions: * [Input is automatically inverted](https://github.com/NeuralEnsemble/python-neo/blob/7409f47b5debd4d2a75bbf0e77ac10562446c97a/neo/rawio/neuralynxrawio.py#L109-L110), I was...

TRuikes

[NixIO] [BUG] Spiketrains with t_start > 0 dissapear

5

Hey, I was slicing some spiketrains and wanted to store them in the nix format. However, when I load the .nix file all spiketrains that did not have `t_start =...

morales-gregorio

Updates to Blackrock File Format (3.0)

5

Blackrock is expecting a change to our file format in an upcoming release (I think at least a couple of months away), so I wanted to reach out to you...

NickHalper

Read digital channels from rhd

3

Hi, I’m using `IntanIO` to read form `rhd` files, which works well but does not read digital channels. Am I missing something or is this still to-be-implemented? Just as a...

luiztauffer

Add more resampling functionality for Analog and IrregularlySampledSignals

2

Currently Signals can be resampled based on regular sampling intervals. Additionally it would make sense to be able to provide irregular sampling times and extract the corresponding values (via interpolation)...

JuliaSprenger