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Request : Add compatibility with next gen BRW files

16

Hi, 3Brain is currently moving towards BRW v4.x, compatible with newer versions of their software but most importantly adapted to multiwell chips, which means that recordings from multiple parallel chips...

b-grimaud

Fully lazy imports of IO submodules

2

@JuliaSprenger @samuelgarcia Hello everyone - a recent [issue on NeuroConv](https://github.com/catalystneuro/neuroconv/pull/71#issue-1330574689) drew our attention to the fact that global module import structures such as https://github.com/NeuralEnsemble/python-neo/blob/master/neo/__init__.py#L10-L11 and https://github.com/NeuralEnsemble/python-neo/blob/master/neo/io/__init__.py#L278-L379 will actively import every...

CodyCBakerPhD

Error reading blackrock nev file, IndexError: too many indices, in blackrockrawio.py - due to deprecation drop in Numpy 1.23.0

7

To replicate: `brIO = neo.io.BlackrockIO('datafile002.nev')` Error is at: ``` mask = [ev_ids == i] > curr_data = data[mask] E IndexError: too many indices for array: array is 1-dimensional, but 2...

histed

PhyIO automatically loads csv files in the data folder, but assumes that they only have two columns. This causes an error e.g. when loading a SpikeInterface folder with quality metrics...

Kleinjohann

Also @samuelgarcia , if I try to instantiate from a folder in which there are only 'lf' files, no 'ap' file, I get the following errors ```python extractor = SpikeGLXRecordingExtractor(...

JuliaSprenger

https://github.com/NeuralEnsemble/python-neo/blob/0aa3a68629f9a6d557523c09c903ad699399b3f7/neo/rawio/spikeglxrawio.py#L241-L245 It may be helpful to have a warning when .meta is not found in a spikeglx data directory. Some data download options (e.g. gin) append '.txt' at the end...

D1o0g9s

Error loading plx file

4

I'm trying to load a .plx file and I'm getting an error when using .read(). This error seems to be specific for this file. However, I know the file is...

AlexLM96

Compatibility for .pl2 files

9

As Plexon .plx file is supported, will there also compatibility for the newer format .pl2 be implemented?

KonKob

Possible missing streams in `CedIO`

8

Hi, I am looking at the gin data for CedIO and I found the following: ``` from pathlib import Path from neo import CedIO DATA_PATH = Path("/home/heberto/ephy_testing_data/") # Gin data...

h-mayorquin

See https://github.com/NeuralEnsemble/python-neo/actions/runs/1962231833

JuliaSprenger