python-neo

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NestIO for large datasets

4

Hi! I was recently working together with @jasperalbers, who is using the NestIO to load simulated data from large scale multi-area models. His problem was that he has hundreds of...

morales-gregorio

This permits extracting file metadata as io attributes. External tools don't need to parse file headers to retrieve additional, non-annotated metadata.

JuliaSprenger

NWB Inspector Tests

1

NWB Inspector is a new tool to help inspect NWB files for compliance with NWB Best Practices : https://github.com/NeurodataWithoutBorders/nwbinspector The following pull request allows the validation of files created with...

legouee

NestIO compatible with Nest 3.2

17

Hi all, @rgutzen @jasperalbers and I were looking into the NestIO today and we came up with this edits that make the current NestIO compatible with both Nest 2.x and...

morales-gregorio

auto push to pypi on push tags

5

@JuliaSprenger @apdavison @mdenker : have a look. This auto push to pypi when we tag. We have the same on spikeinertface. Here we don't run the full io test which...

samuelgarcia

support for just .spikes in folder

2

Hi I was trying to load an openephys _.spikes_ file but it required the .continuous file as well. To fix that, I separated a bit better the data loading, all...

ferchaure

Remove the HAVE_PACKAGE logic and module import of extra dependency.

2

We have this kind of logic for many IOs ```python try: import sonpy HAVE_SONPY = True except ImportError: HAVE_SONPY = False class SomeClass def __init__(self): assert HAVE_SONPY, 'sonpy must be...

samuelgarcia

Array-annotate Amplitudes and PCs in PhyIO

2

PhyIO was written before array_annotations were fully functional, so it had TODOs in the comments to deal with data which should be array_annotated once that's possible. I added array_annotations for...

Kleinjohann

Check spikeglx file size comparison

1

@JuliaSprenger I just checked out all the files that @TomBugnon was using, and everything looks square to me. Using Python 3.7.12, `os.stat(path).st_size` properly reports uncompressed file size, matching SpikeGLX metadata...

JuliaSprenger

Was sent here by Samuel Garcia, since he said on the SpikeInterface page that this was likely a Neo issue. Screenshot attached  .

BenATemple