python-neo

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Adding type hints

5

Hello everyone, I would like to go through the code in the current master-branch and add type hints to most stuff. However I wanted to ask if this enhancement would...

codingchipmunk

[WIP] Nest3io

4

This PR adds support for the sion format, the new output format of NEST. The IO depends on the nestio-tools (https://github.com/apeyser/nestio-tools) and the sionlib library (https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/sionlib-download_node.html). Current status: Work in...

JuliaSprenger

We have a _repr_pretty_. We also should do the same for __repr__. No ?

samuelgarcia

Support Quantity-like annotations when saving/loading .mat files

1

Currently, the neomatlabio can save annotations of objects. If these annotations are a quantities object, they loose their units and only a classic `np.array` is retained. In contrast, object properties...

mdenker

Have to disable neo when running pylint

4

We are currently running http://pylint.pycqa.org/ to check our code Note: We are using a version

Christian-B

Neo DataObject has the `__deepcopy__` function, but it's slow, compared to cloning the array only: ```python from copy import deepcopy sts = [elephant.spike_train_generation.homogeneous_poisson_process(rate=10*pq.Hz, t_stop=1*pq.s) for _ in range(1000)] %timeit deepcopy(sts)...

dizcza

NixIO performance writing and reading spike trains

6

My use case is writing and reading of hundreds of spike trains with order 10k spikes each. I observe an increasing time it takes for reading and writing of NixIO/hdf5...

schmitts

v0.8.0 performance degradation

18

Long story short, some analysis gets slower by x14 times (from 90 sec to 1279 sec) by upgrading neo from 0.7.2 to 0.8.0. 1. The bottleneck is in utility function...

dizcza

This binary output format is generated by [monkeylogic](https://monkeylogic.nimh.nih.gov/) and used for task coordination. Event times and related parameters could be extracted and represented as neo.Events and neo.Epochs to easily relate...

JuliaSprenger

Add a warning when loading a file in a file format that is not cross-version compatible

2

e.g. PickleIO, see #779 Could also add a warning when writing in such a format.

apdavison