Augustus
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Gaius-Augustus
Genome annotation with AUGUSTUS
Im trying to use this simple command augustus --species=aspergillus_nidulans ./input/47Farrow.fa the fa file its just a 100 kb seq, and when i run this i get replaced tx with 0...
Dear, I use AUGUTUS for gene prediction. I found when I want to use UTR training for prediction, the running is very lower and redundant. I check the code and...
Hello, I am running these commands, etraining --species=Lsceleratus augustus.gbk.train augustus --species=Lsceleratus augustus.gbk.test | tee first_training.out and the first lines of the STDOUT are: GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after...
Sorry for bothering you but I have an urgent question about the accuracy of the gene prediction of AUGUSTUS. I am trying to express segments of the new coronavirus SARS-CoV-2...
I've been having problems with my installation of BUSCO not working properly. After a great deal of troubleshooting, I have narrowed the problem down to the etraining binary, which is...
Augustus training jobs fails when using a single sequence training fasta files encoded in UTF-8 with BOM. The subroutine formatDetector() in https://github.com/Gaius-Augustus/Augustus/blob/master/scripts/helpMod.pm#L153 demand '>' as first character but fails when...
Hi, I'm trying to compile `bam2hint` & `bam2wig`, I can't. For `bam2hint` this is the Makefile: ``` BAMTOOLS = /newhome/tk19812/software/bamtools INCLUDES = -L$(BAMTOOLS)/include/src LIBS = $(BAMTOOLS)/lib/libbamtools.so -lz SOURCES = bam2hints.cc...
Dear colleagues, Is there any tool that would allow to automatically compare training parameters created by AUGUSTUS etraining and gain some insights from such a comparison (i.e. judging if training...
Dear Developer, the script filterGenesIn_mRNAname.pl is not working when used by BRAKER.pl. Can you please have a look? I can send my data to use for debugging. Cheers Luigi
as it appears to have become a standard to use lower-case softmasking
