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GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!!

Open Tdanis opened this issue 4 years ago • 0 comments

Hello, I am running these commands,

etraining --species=Lsceleratus augustus.gbk.train

augustus --species=Lsceleratus augustus.gbk.test | tee first_training.out

and the first lines of the STDOUT are:

GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. Warning: Sequence was shorter than expected frome the source line of the Genbank entry ( expected 1716 bp). Please compare the line 'source 1..X' with the actual sequence length (1715). CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c ....

Could you help me please? is it important for the downstream analysis?

Thank you

Tdanis avatar Mar 30 '20 11:03 Tdanis