Augustus
Augustus copied to clipboard
GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!!
Hello, I am running these commands,
etraining --species=Lsceleratus augustus.gbk.train
augustus --species=Lsceleratus augustus.gbk.test | tee first_training.out
and the first lines of the STDOUT are:
GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 8 annotations. Warning: Sequence was shorter than expected frome the source line of the Genbank entry ( expected 1716 bp). Please compare the line 'source 1..X' with the actual sequence length (1715). CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c GBProcessor::getGeneList(): GBProcessor::getJoin( ): failed!!! Encountered error after reading 9 annotations. CDS contains character c ....
Could you help me please? is it important for the downstream analysis?
Thank you