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Published 20 hours ago • verified publisher icon Gaius-Augustus

etraining always crashes on one large gene

Open seangallaher opened this issue 4 years ago • 0 comments

I've been having problems with my installation of BUSCO not working properly. After a great deal of troubleshooting, I have narrowed the problem down to the etraining binary, which is part of Augustus (v3.3.3). The etraining binary always crashes on me with a "Segmentation fault (core dumped)" error message when it gets to a particular gene. If I remove that gene from the input, etraining runs without a problem.

The problematic gene is quite large (77 kbp) and has a lot of exons (attached below):

problem_gene.txt

I'm running etraining with 32 GB for just that single gene, so I don't think it is a shortage of memory. Any ideas?

seangallaher avatar Mar 05 '20 23:03 seangallaher