Augustus
Augustus copied to clipboard
Gaius-Augustus
Genome annotation with AUGUSTUS
Since installing augustus from source without root previleges wasn't easy for me, I thought posting here the commands I used for installation. * If not already done, install [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html), [bioconda](https://bioconda.github.io/),...
when I the run the braker, the problem was encountered. The input: braker.pl --cores=16 --species=Cyclidium --genome=Cy_Canu.filter.fasta --bam=all.bam Cy_hisat2.sort.bam The output: # WARNING: Number of reliable training genes is low (560)....
Hi! I am using AUGUSTUS to predict genes in a new species. I am following the current protocol of AUGUSTUS and I extracted the flanking regions of the genes of...
Hi, I'm getting `Substitution loop at gff2gbSmallDNA.pl line 200, chunk 1.` I don't understand what might be the source of the error. Any help? cheers F
Hello, I use Augustus to predict alternative transcripts. The result is in gff format. But I don't understand the 6th column. It looks like probabilities. But I noticed that the...
Hi there, I am currently working on gene prediction for the pseudo-fungus _Phytophthora meadii_. Unfortunately, I couldn't locate any relevant gene models associated with this species. Is it possible to...
Hello, I get at stept 14/17 the following error => ERROR [14/17] RUN make clean > [14/17] RUN make clean: 0.253 cd src && make clean 0.254 make[1]: Entering directory...
`src/geneticcode.cc` currently only goes up to table 24. There are now a handful of new tables in [`gc.prt`](https://github.com/ncbi/ncbi-cxx-toolkit-public/blob/48ff7051c7e8d8a65ae50125fca6f7db531f026c/src/objects/seqfeat/gc.prt). Of particular note are tables 27, 28, 31, which have no dedicated...
Some stats from the EU Galaxy server, maybe that helps for your next funding. ``` toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.4.0+galaxy1 | 5300 toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.3.3 | 1536 toolshed.g2.bx.psu.edu/repos/bgruening/augustus_training/augustus_training/3.4.0+galaxy1 | 1068 toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.2.3 | 944 toolshed.g2.bx.psu.edu/repos/bgruening/augustus_training/augustus_training/3.3.3 | 698...
Command is singularity build augustus.sif Singularity.def FATAL: You must be the root user, however you can use --remote or --fakeroot to build from a Singularity recipe file Does the singularity...
