ig_repertoire_constructor

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I believe your fantastic idea in IgRec could help me solve my NGS library building related problems, and your IgRec runs smoothly on my NGS results, which are generated from...

sunyj28

1. The arg parser doesn't accept the `--help` option 1. Run-time compile is turned on by default, forcing use of the developer option `-p` 1. There is no way to...

scharch

Compile error

1

Hi All, I'm trying to compile the latest version of Igrec on Centos 7, but I keep hitting errors. I'm using: gcc 7.4.0 cmake 3.15.3 python 2.7.15 Here are the...

davidecarlson

Переписанная версия paired_read_merger'a. Добавлена возможность передать параметры в командной строке, но в связи с этим изменился вызов (принимает полноценную командную строку, а не три названия файлов. Появилась возможность читать риды...

egor-bogomolov

sudo python diversity_analyzer.py -i ~/test_div_anal.fasta -o ~ This overwrote my entire home directory instead of creating an output as would be expected. This seems rather unsafe. To be fair, running...

venkr

Hogc

1

Вашему вниманию предлагается новая версия графопостроилки. Изменения: 1. Она быстрее. Примерно раз в 10. 2. Она использует клевенькое битовое расстояние (спасибо Насте Антоновой) и ускоренный индекс (спасибо Антону за идею)...

eodus

Macros VERIFY improvement

2

1) Add (line, file) 2) Unmangle stacktrace

seryrzu

Testing: 0eb6e39a054262595dce097f88708f4e6119d144 1. `./build/release/bin/vj_finder` succeeds and runs VJF on test dataset. 2. `./build/release/bin/vj_finder "configs/vj_finder/config.info"` fails but should be equivalent to 1. ``` vjf_test 0:00:00.000 4M / 4M INFO VJFinderLaunch (vjf_launch.cpp...

seryrzu

VJFinder: VJ_HITS_ARE_EMPTY on final_repertoire_large.fa

2

When one applies VJFinder from ``testing``, commit: c22d4e7a71e79a5501fe52d6505d4cf05f97d7fb to /Sid/abzikadze/datasets/age/final_repertoire/final_repertoire_large.fa VJF filters out many seqs with the reason: VJ_HITS_ARE_EMPTY. It should not be so, since final_repertoire_large.fa contains (nearly) perfect sequences....

seryrzu

install test fail

1

Hi, I ran ./igrec.py --test to verify the installation, but failed and got the following messages. ==== Low Abundant Clusters Remover finished [Errno 39] Directory not empty: 'igrec_test/dense_sgraph_finder' Traceback (most...

homopolymer