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Published 20 hours ago • verified publisher icon yana-safonova

VJFinder: VJ_HITS_ARE_EMPTY on final_repertoire_large.fa

Open seryrzu opened this issue 8 years ago • 2 comments

When one applies VJFinder from testing, commit: c22d4e7a71e79a5501fe52d6505d4cf05f97d7fb to /Sid/abzikadze/datasets/age/final_repertoire/final_repertoire_large.fa VJF filters out many seqs with the reason: VJ_HITS_ARE_EMPTY.

It should not be so, since final_repertoire_large.fa contains (nearly) perfect sequences.

Start from igrec dir: ./build/release/bin/vj_finder -i /Sid/abzikadze/datasets/age/final_repertoire/IGH/1/final_repertoire_large.fa -o /Sid/abzikadze/datasets/age/divan_output_on_final_repertoire_large/IGH/1 --loci IGH

seryrzu avatar Nov 28 '16 12:11 seryrzu

Please provide command line you use either.

Chushuhuch avatar Nov 28 '16 12:11 Chushuhuch

Command line added

seryrzu avatar Nov 28 '16 12:11 seryrzu