sequenceserver
sequenceserver copied to clipboard
wurmlab
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
- j/k : select next/previous hit - n/p: select next/previous HSP - x: toggle selection (checkmark) of current HSP - o: open/close current hit (same as clicking on the chevron)
I'm sure someone will ask for this... how do I automagically set up a SequenceServer interface for the results of my galaxy installation [1](http://usegalaxy.org)? The solution will probably be a...
Sequence type notifications are set to hide after five seconds or if the user clicks somewhere on the page. I think the mixed sequence type notification (shown below) should instead...
We should enable a slightly-modified table output format that is gff or bed-like and can thus be more easily read into IGV
If instead of a directory containing fasta file, users provide path to a fasta file during setup or to -d option, automatically use dirname as database directory.
Through the config file and through the command-line interface. e.g., ``` sequenceserver --database_dir /db1,/db2,/db3 sequenceserver -d /db1 -d /db2 ``` This came up on the mailing list: https://groups.google.com/d/msg/sequenceserver/7qxsNTmOI3A/WOS2yGaRAQAJ
When there are large numbers of databases, the single-column view doesn't work well (need to scroll too far). On a wide screen, we should enable a 2nd (or even 3rd/fourth)...
We set up a sequenceserver app for public and usually the /tmp dir would ran out of disk storage because of long DNA query sizes resulting in large temporary files....
When you submit a job, you now get a "holding" page that automatically refreshes. For small jobs it rapidly disappears. However, for long jobs, a user can question whether their...
We show a list of databases at the top of the results screen. When an instance has dozens or hundreds of databases that have long names, this is unwieldy. So...