sequenceserver
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wurmlab
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
When many queries, we don't show an index (for obvious reasons). But it would still be handy to be able to navigate to next. "next" and "previous" buttons
Using Master on Safari (but not Brave) I currently get the index part on the left floating on top of the results https://www.loom.com/share/cf140623a2f441619da116df6eb3b50d
E.g, for tblastn, the "advanced parameters" field can take ` -db_gencode 4` (In order to change the genetic code) - but we don't show this in the help.
I am running SequenceServer behind the reverse proxy following the [document](https://sequenceserver.com/doc/#nginx). However, it did not work, because, after I submitted the job, I was redirected to the URL like "http://mydomain.com/",...
Capybara tests fail if geckodriver is not installed. It could be nice if they were simply not run, like treated as pending, if geckodriver is not installed or other dependencies...
- [ ] they should indicate a, b, c letters like so "-hit_1_hsp_c" (after the coordinate) - [ ] they should have whitespace (one newline) between HSPs
So ruby 2.6.10 is no longer LTS supported (i.e. no more security updates). Some recent installs using ruby 3 have highlighted issues. Probably we will want to get everything to...
Hi, I have got Sequence Server up and running using Docker (tried both the docker hub image, as well as building with Dockerfile and the latest code). However, when I...
Hi, I can't access Sequence-server ( http://localhost:4567 ) in the browser after I did the following steps: ``` $ wget -c https://github.com/wurmlab/sequenceserver/archive/refs/tags/2.0.0.tar.gz $ vim docker-compose.yml $ cat docker-compose.yml sequenceserver: build:...
Sequence detection type failed (because its part AA part NT in this file - which should never exist in reality) and it returned `false`, but Seqserv tried to format the...