sequenceserver
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wurmlab
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Currently Uniprot links are rendered only for Uniprot db. NR contains hits from SwissProt and PDB. Would be good if NR hits could be linked to corresponding resources apart from...
Implement in a manner that primary colours are easily overridable by user. Default colour scheme should be red, orange, yellow, blue in the order of increasing significance (like colours of...
Layout of karyotypes and labels can be further improved. - [ ] A minimum length threshold for karyotypes (default: 35 px) would be great. Other karyotypes should be resized to...
Dot plot is a great way to visualise local sequence similarity. There are several tools to generate dot-plot, but it might be worth writing something simple of our own using...
(here my query was 2 fasta seq for combined length of ~1580380 nt) 
We previously discussed potential alternatives to BLAST - namely in the form of HMM-searches. An approach which could be relevant would be best based on HHBlits or equivalent (includes uniprot-derived...
Some hurdles may be met if there are many databases. This is already becoming clear on fourmidable. One idea could be to add a "Select all" button. A more elegant...
Because in certain cases we generate FASTA files with "comments" on top. And the files we generate should be reusable by us.
Hi, We used SequenceServer to host our databases of EukProt v3 (https://evocellbio.com/SAGdb/EukProt/), and we found there was errors when we tried to download the hits FASTA by clicking "FASTA" on...
- [ ] validation should use standard HTML5 form validation when possible (e.g. `