cdhit issues

Results 113 cdhit issues

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change Makefiles to adhere to some common conventions

Closes: #33

Question about parameter

Hi, I am writing to ask you about the -l parameter in cd-hit-est. The manual says it is length of throw_away_sequences, default 10. Does it mean that sequences above this...

mylena-s

Compile issue on MacOS

Hi, I'm having an issue compiling cdhit on MacOS 10.14.5. I first downloaded the executables using git clone and placed them in my /usr/local/bin directory. I then attempted to compile...

rlfrench

CD-HIST EST segmentation fault

Hi, i recently downloaded cd-hit. When i run cd-hit-est i get this trouble with the following code: $cd-hit-est -i all.fasta -o resultados.fasta -c 0.95 -n 10 -M 0 Warning: from...

diegoALJ

Not Enable to Use Make on Windows

`C:\Users\Pictures\cd-hit-v4.8.1-2019-0228>make g++ -fopenmp -DWITH_ZLIB -O2 cdhit-common.c++ -c process_begin: CreateProcess(NULL, g++ -fopenmp -DWITH_ZLIB -O2 cdhit-common.c++ -c, ...) failed. make (e=2): The system cannot find the file specified. make: *** [cdhit-common.o] Error...

RJain12

When sequence contains at least one gap '-' I get: Discarding invalid sequence or sequence without identifier and description!

Hi everyone, If my sequence contains even a single gap '-' I always get the following warning: > Discarding invalid sequence or sequence without identifier and description! I did not...

jasiozaucha