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weizhongli
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when I run cd-hit on Ubuntu, a fatal error "Fatal Error: in diag_test_aapn, MAX_DIAG reached" happened. The details of installation and run steps are below. Can you help to find...
Hi, CDHIT removes invalid sequences before clustering – is there anyway to disable this functionality? Thanks so much, Braden
`cd-hit -i -o -T 0 -g 1 -s 0.8 -c 0.9` total seq: 17 longest and shortest : 1531933 and 85779 Total letters: 12157105 Sequences have been sorted terminate called...
Hello! I would juste like to know: is it possible to use cdhit-est by "feeding" it directly fasta lines instead of fasta files? I tried with this example: `${cdhitest} -r...
This patch adjusts the Makefile to respect CXX, canonical meaning of PREFIX, and DESTDIR. It does not change the default make behavior, but if CXX, PREFIX, and/or DESTDIR are provided...
I have installed gcc compiler but still gives an error: clang: error: unsupported option '-fopenmp' make: *** [cdhit-common.o] Error 1
Iam on MAC os i used brew to install CD-hit `brew install cd-hit` ``` oho@Mac-Pro:~$ brew install cd-hit Updating Homebrew... ==> Installing cd-hit from brewsci/bio ==> Downloading https://linuxbrew.bintray.com/bottles-bio/cd-hit-4.6.8.sierra.bo Already downloaded:...
Hello, I am having a strange problem. I have a file with multiple sequences, and multiple instances of the same sequence. After running CD-HIT-EST with c=0.95 the result shows equal...
I am trying to run the workflow for CD-HIT-OTU-MISEQ (newest CD-HIT release, using SILVA database). It seems to work well until the final stage, but fails at the final clustering...
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