cdhit

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Please, see this: https://github.com/SchulzLab/KREATION/issues/4 Thank you

rafaeltiveron

This project truly deserves a clean, well organized and good looking repository. I moved source code files to a "src" directory and modified the Makefiles to write the binaries into...

pentalpha

CD-HIT is running forever

6

``` What steps will reproduce the problem? 1.When I used from provean.sh. CD-HIT was called with option " -i /tmp/proveanEv9aLE/tmp.fasta -o /tmp/proveanEv9aLE/cdhit.cluster -c 0.75 -s 0.3 -n 5 -l 158...

GoogleCodeExporter

Have you considered adding support for compressed (e.g. gzipped) input files? I use cd-hit-est-2d for reference-based OTU clustering and sometimes decompressing two large FASTQ files (forward and reverse Illumina reads)...

grayfall

Hello, I am wondering if someone could clear something up for me. I am curious why it is that if I run CD-HIT-EST on the same dataset, once with c=0.95...

MattStata

release 4.6.8 prints version 4.7. This is slightly misleading and horrible in terms of reproducibility.

bernt-matthias

parameter combination problem

1

When running: ``` cd-hit -i "/tmp/tmpN5gjOx/files/000/dataset_4.dat" -o rep_seq -c 0.9 -n 5 -t 2 -b 20 -l 10 -G 0 -aL 0.0 -AL 99999999 -aS 0.0 -AS 99999999 -A 0...

bernt-matthias

When i run NG-Omics-WF.py follow by OUT pipeline. it notice: > File "./NG-Omics-WF.py", line 61 > print message > ^ > SyntaxError: Missing parentheses in call to 'print' This is...

letunglam1991

Hello! Professor Li, I have three gene sets that have gone redundantly, all of which are redundant with `-n 8 -G 0 -aS 0.9 -c 0.95 -M 0 -d 0...

alienzj

When I try to call CD-HIT from two directories above the folder which contains the source code, I get an error as follows: The code works when called from within...

sidhomj