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weizhongli
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Clustering less than 10 sequences by psi-cd-hit fails. This fails for an "Illegal modulus zero in psi-cd-hit.pl at line 141". Checking if int($NR_no/10) and skipping the call to blast_formatdb() would...
Previously would only cluster perfect matches except for mismatches close to the end (~10 bp) Addresses #31
The usage presented in the tools in the CD-HIT suite that take nucleotide sequences as input is incorrect. For example, when one calls `cd-hit-est` (v4.7), there are references to amino...
I am trying to run cd-hit-dup using a couple of PE read libraries. I am absolutely sure that both fastq files have the same number of reads, but when I...
Hi There, I was wondering if it is possible to define preferred representative sequences for clusters in cd-hit when there are identical sequences in a cluster.
hello -- Is it safe to compile and work off the download the master or would you suggest sticking to releases? On a related note, do you have a standard...
I was wondering why an additional tarball is uploaded for each release, while the tarball that is already available is basically identical (other than the name of the `Makefile`, which...
I try to remove duplicates (up to 2 mismatches) from the example below running: cd-hit-dup -i input.fa -o output.fa -e 2 cd-hit-dup retrieves 8 clusters, when it should be 2...
Hi, Is it possible to get full length fasta headers output in the .clstr file from psi-cd-hit? There's nothing in the help file about it accepting the `-d #` parameter...
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