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Published 20 hours ago • verified publisher icon weizhongli

multi-threading with OpenMP is NOT enabled!

Open YiJessePi opened this issue 5 years ago • 4 comments

When I'm running cd-hit with multithreading I get the following warning:

Option -T is ignored: multi-threading with OpenMP is NOT enabled!

Any way to enable multithreading on my computer? (I've installed cd-hit via conda few days ago)

YiJessePi avatar Nov 05 '19 13:11 YiJessePi

I have the same issue, I also installed using conda.

aimirza avatar Nov 28 '19 18:11 aimirza

I think this is the only option with conda. I've installed it not via conda and to do multithreading

YiJessePi avatar Nov 28 '19 18:11 YiJessePi

I have a system where neither Docker nor compilation are an option without going through extensive wall times with system admins and alike :( The conda install option was really the best way to go, but withouth OpenMP support through that it's problematic.

I have a suggestion: why not keep two versions on conda? One with OpenMP, the other without.

sacdallago avatar Aug 24 '20 06:08 sacdallago