cdhit
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weizhongli
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I installed cd-hit-auxtools via a conda. However, when I run cd-hit-dup, I get an issue for Segmentation fault (core dumped). I have seen in previous issues #27 and #97 users...
Once i did a normal task, and got the problem! There were no results out. ![Uploading a.png…]()
Dear cdhit development team, I have a big dataset. Because I predicted genes for each metagenome fasta using the prodigal software, then I got 16 prodigal annotated gene files, each...
During the building/install of CD-hit on PopOS, I get following warning: ``` In file included from cdhit-common.c++:28: In member function ‘void NVector::Resize(int, const TYPE&) [with TYPE = long int]’, inlined...
I'm trying to install cd-hit according to its guidance in command prompt. However, when I run "make" command, I encounter this problem. How may I solve this issue? ```cmd D:\clustering\cd-hit-v4.8.1-2019-0228>make...
Hi I have one issue , I am doing hierarchical cd-hit from 80 to 60 then form 60 to 30, then i used clstr2txt to combines multiple cluster files from...
I follow these steps in Linux system: 1. tar -zxvf cd-hit-v4.8.1-2019-0228.tar.gz 2. cd cd-hit-v4.8.1-2019-0228 3. make 4. cd cd-hit-auxtools 5. make Then, i try to use cd-hit for my file,...
Hello! I was wondering what the -b (band_width) option does since I do not quite understand its explanation in the cd-hit wiki. Thank you!
Hello, I am using cd-hit-v4.8.1-2019-0228. The command `-d` command does not appear to change the length of the description in the resulting cluster file in cd-hit-est. my command is: `./cd-hit-est...
Hello I previously ran cd-hit on a HPC to dereplicate some contigs with no problem `cd-hit-est -i 10k_seqs.fasta -o cdhit_outdir/contigs_cd-hit -c 0.95 -n 8,9 -G 0 -aS 0.8 -g 1...
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Automatically exported from code.google.com/p/cdhit