cdhit
cdhit copied to clipboard
weizhongli
Automatically exported from code.google.com/p/cdhit
``` What steps will reproduce the problem? 1. ./cd-hit -i sprot_archaea -o sprot_archaea.clust80 -c 0.8 -n 5 2. ./cd-hit -i sprot_archaea.clust80 -o sprot_archaea.clust60 -c 0.6 -n 4 3 perl psi-cd-hit.pl...
``` Hi The program shows strange characters ('zu') for RAM and 'Max number of representatives'. Please see the log below. What ca cause this? Is it a bug? ================================================================ Program:...
``` What steps will reproduce the problem? 1.cd-hit-454 command line 2. 3. What is the expected output? What do you see instead? The expected output is that the sequences be...
``` What steps will reproduce the problem? 1. make openmp=yes debug=yes 2. 3. What is the expected output? What do you see instead? the expected output is the building of...
``` What steps will reproduce the problem? 1.create a set of references 2.pick a few fasta records from the references and save into separate fasta file. This file will serve...
``` What steps will reproduce the problem? 1. file1.clstr = 7.0 Gb, clustered about 143 million DNA seq reads into 41 040 442 clusters 2. file2.clstr = 3.6 Gb, output...
Hi, When I used cd-hit-est-2d, and set -c 0.6 -d 0, the error was: invalid clstr threshold, should >=0.8. How can I make the threshold below 0.8. Thank you very...
Hello Cd-hit team, I am using cd-hit like this: cd-hit -i 16S_sequences_2.fasta -G 0 -aS 0.2 -o 16S_sequences_2.cdhit -p 1 I want to calculate pairwise local identity and alignment column...
I have uploaded the sample sequences in link: [https://hershey.dbi.udel.edu/wangy/CD-HIT/](url) Basically with -s 0.8 it does not pick up the members when we cluster with CD-HIT-2D. OPTIONS="-s 0.8 -c 0.5 -n...
Metadata
Owner
Metadata
Automatically exported from code.google.com/p/cdhit