vsearch
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torognes
Versatile open-source tool for microbiome analysis
Add an option to the `--cut` command to extract the regions between the restriction sites indicated with the new options `--cut_left` and `--cut_right` (instead of the `--cut_pattern` option).
Hi, Can I request for an option (like `otutab_rare` on `usearch`) to normalize samples to the same number of reads in otu table? Many thanks in advance!
The first need in **usearch** is **-otutab_norm** function; the second need in **usearch** is **sintax_summary** function. Has the function not been developed in **vsearch**. Hope your answer. Thanks!
I use `vsearch usearch_global --self` a lot on a 16s database and it works great. But sometimes I get a sequence match to a 16s allele from the same genome...
`vsearch --sintax` does not accept that option, and filters out sequences shorter than 32 nucleotides.
Dear vsearch team, I am curious what is the theoretical time complexity for search_global algorithm related to database sequence size (considering the same length for both database sequence and query...
It would be nice if vsearch could search for PCR products given primer sequences, as the usearch `-search_pcr` function does. The `search_oligodb` command probably does the heavy lifting and would...
Hello there, would it be possible to add a low memory mode for the --derep_fulllength command? Many metabarcoding pipelines need a global dereplication before clustering or denoising. For a large...
