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Could vsearch Standardize the otu table and calculate the relative abundance of phyla, class, order, family and genus.

Open Statistic-Qin opened this issue 2 years ago • 4 comments

The first need in usearch is -otutab_norm function; the second need in usearch is sintax_summary function. Has the function not been developed in vsearch. Hope your answer. Thanks!

Statistic-Qin avatar May 01 '22 03:05 Statistic-Qin

Thanks for your suggestion. We have not implemented these functions in vsearch yet.

Unfortunately, we have limited capacity to implement new features and we do not have any plans to implement these features at the moment.

torognes avatar May 02 '22 07:05 torognes

Thank you for your reply! Unfortunately, these functions are not available yet, but it is already very good and can solve many problems.

Statistic-Qin avatar May 04 '22 15:05 Statistic-Qin

Seems like the usearch otutab_norm command is obsoleted and replaced by otutab_rare:

http://drive5.com/usearch/manual/cmd_otutab_rare.html

torognes avatar Aug 05 '22 11:08 torognes

This issue is related to issue #465.

torognes avatar Aug 05 '22 11:08 torognes