vsearch
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torognes
Versatile open-source tool for microbiome analysis
Good evening, I have had a great experience using vsearch and recommend it to everyone. The documentation is clear and concise and makes vsearch very accessible. I'm happy to see...
The `--rereplicate` command would be a good starting point as it accepts only a limited number of options. The manpage could be accessed as such: ```sh man vsearch man vsearch-rereplicate...
A user has asked for this option: When using "-cluster_fast" VSEARCH builds consensus sequences considering terminal gaps in the alignment, so a lot of relevant sequence information on the flanking...
```bash vsearch \ --usearch_global
When clustering or searching with short sequences, obvious hits may be missed. This is also a problem when much of the sequences are masked. It is probably due to few...
The README says that this "may be added in the future." Any updates on those plans? Would adding AA support be a large undertaking or something as simple as adding...
A user has suggested the implementation of an octave plot command (otutab_octave) as in usearch version 11. It helps to visualize alpha diversity using a histogram-like plot and to determine...
Should be simple to add. Together with the other issues that suggests other usearch 7 commands to be implemented, this will make the set of usearch 7 commands for nucleotide...
I find the unix man format (roff) difficult to write, but I think it is very nice to have man pages handy. Perhaps we could write the documentation in markdown...