sequencing topic

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

google

Official code repository for GATK versions 4 and up

broadinstitute

A Java API for high-throughput sequencing data (HTS) formats.

samtools

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

bitfieldaudio

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain

Accurate and flexible loops calling tool for 3D genomic data.

YaqiangCao

BAM Statistics, Feature Counting and Annotation

tobiasrausch

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

chanzuckerberg

A collection of scripts and notes related to genomics and bioinformatics

igordot

UGENE is free open-source cross-platform bioinformatics software

ugeneunipro