sequence-alignment topic

List sequence-alignment repositories

vsearch

636
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122
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Versatile open-source tool for microbiome analysis

minigraph

392
Stars
38
Forks
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Sequence-to-graph mapper and graph generator

sequenceserver

267
Stars
114
Forks
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Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

ksw2

124
Stars
24
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Global alignment and alignment extension

Arioc

53
Stars
8
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Arioc: GPU-accelerated DNA short-read alignment

kalign

116
Stars
28
Forks
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A fast multiple sequence alignment program.

unimap

85
Stars
4
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A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

biscuit

63
Stars
24
Forks
Watchers

BISulfite-seq CUI Toolkit

orthologr

84
Stars
27
Forks
Watchers

Genome wide orthology inference and dNdS estimation