sequence-alignment topic
List
sequence-alignment repositories
awesome-sequencing-tech-papers
26
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3
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A collection of publications on comparison of high-throughput sequencing technologies.
edlib
489
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159
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Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
biojava
581
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379
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:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
biopython
4.2k
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1.7k
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172
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Official git repository for Biopython (originally converted from CVS)
minimap2
1.7k
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394
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A versatile pairwise aligner for genomic and spliced nucleotide sequences
bwa
1.5k
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547
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Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
seqan3
390
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80
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The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
diamond
966
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172
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Accelerated BLAST compatible local sequence aligner.
bwa-mem2
687
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91
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The next version of bwa-mem