t-cell topic
List
t-cell repositories
mixcr
312
Stars
78
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MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
vdjtools
125
Stars
40
Forks
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Post-analysis of immune repertoire sequencing data
vdjdb-db
127
Stars
27
Forks
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🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
MixMHC2pred
32
Stars
10
Forks
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HLA-II ligand predictor.
covid19
42
Stars
3
Forks
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🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
migmap
50
Stars
20
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HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
vdjmatch
36
Stars
7
Forks
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⚙️ Matching T-cell repertoire against a database of TCR antigen specificities