microscopy topic
OAD
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
picasso
A collection of tools for painting super-resolution images
TensorFlow-MIL
TF Implementation of Multiple Instance Learning FCN.
atomai
Deep and Machine Learning for Microscopy
libCZI
Open Source Cross-Platform C++ library to read CZI image files
brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
webknossos
Visualize, share and annotate your large 3D images online
brainreg
Automated 3D brain registration with support for multiple species and atlases.
napari-micromanager
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
MiM_NikonTi
Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.