microscopy topic

CSET (Compressed Sensing Electron Tomography)-toolbox is a three-dimensional TV-based compressed sensing reconstruction toolbox that consists of algebraic iterative algorithms (SART and SIRT) with to...

CSET-Toolbox

:microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

tferr

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

ImSwitch

Single-cell fluorescence microscopy data analysis

Jhsmit

Electron/X-ray ptychography and tomography/laminography

yijiang1

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

hallvaaw

rapidSTORM open-source localization microscopy software

stevewolter

Self-supervised models for encoding protein localization patterns from microscopy images

royerlab

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

Biomedical-Imaging-Group

A convex 3D deconvolution algorithm for low photon count fluorescence imaging

computational-imaging