connectomics topic
cluster_tools
Distributed segmentation for bio-image-analysis
brainGraph
Graph theory analysis of brain MRI data
euclidean-distance-transform-3d
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
ffn
Flood-Filling Networks for instance segmentation in 3d volumes.
dvid
Distributed, Versioned, Image-oriented Dataservice
pytorch_connectomics
PyTorch Connectomics: segmentation toolbox for EM connectomics
skeletor
Extraction of 3D skeletons from meshes.
cloud-volume
Read and write Neuroglancer datasets programmatically.