neuroanatomy topic

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images....

dipy

Automated 3D cell detection in very large images

brainglobe

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

ai-med

Python library for analysis of neuroanatomical data.

navis-org

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

natverse

Automated 3D brain registration with support for multiple species and atlases.

brainglobe

Please use the new version of LiFE: www.github.com/brain-life/encode

francopestilli

Segmentation of anatomical structures in a common coordinate space

brainglobe

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

volBrain

Rendering anatomical heatmaps with brainrender and matplotlib

brainglobe