BrainGlobe
BrainGlobe
brainrender
a python based software for visualization of neuroanatomical and morphological data.
cellfinder
Automated 3D cell detection in very large images
brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
cellfinder-core
Standalone cellfinder cell detection algorithm
brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.