microbiome topic

MaAsLin2: Microbiome Multivariate Association with Linear Models

biobakery

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...

pirovc

Visualize microbiome data with black magic ggtree

lch14forever

Python package to study microbial communities using metabolic modeling.

micom-dev

DeepMicrobes: taxonomic classification for metagenomics with deep learning

MicrobeLab

Emperor a tool for the analysis and visualization of large microbial ecology datasets

biocore

Histosketching Using Little Kmers

will-rowe

Cross-disease comparison of case-control gut microbiome studies

cduvallet

exploratory and interactive microbiome analyses based on heatmaps

biocore

A fast and scalable phylogenetic tree viewer for microbiome data analysis

biocore