biochemistry topic

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

BradyAJohnston

COBRApy is a package for constraint-based modeling of metabolic networks.

opencobra

Ribbon diagrams of proteins in #golang.

fogleman

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages incl...

weisscharlesj

Computational synthetic biology: Predicting DNA edits for bioengineering

20n

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

copasi

Python package to study microbial communities using metabolic modeling.

micom-dev

Analysis of non-covalent interactions in MD trajectories

maxscheurer

Contact map analysis for biomolecules; based on MDTraj

dwhswenson

Experimental tech-demo for PhD thesis in Scientific Markdown; official:

katrinleinweber