genotype topic

Spark VCF data source implementation for Dataframes

lifeomic

teepean

This python script detects known traits in raw human genetic data.

MichaelSebero

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

solgenomics

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

0xTCG

Framework for Interpretable Neural Networks

ArnovanHilten

Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correl...

selfdecode

Efficient compression and retrieve of genotype data with integer sparse matrices

YaoLab-Bioinfo

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for...

dvitale199

A Python package for pharmacogenomics (PGx) research

sbslee