bioinformatics-pipeline topic
saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
cookiecutter
DEPRECIATED! Please use nf-core/tools instead
Pipelines.jl
A lightweight and powerful Julia package for computational pipelines and workflows.
HemTools
HemTools: a collection of NGS pipelines and bioinformatic analyses
nPhase
Ploidy agnostic phasing pipeline and algorithm
mynotebook
My daily notebook on bioinformatic data analysis and machine learning
Finder
A fully automated gene annotator from RNA-Seq expression data
bystro
Bystro genetic analysis (annotation, filtering, statistics)
oliver
An opinionated Cromwell orchestration manager.
Skymap
High-throughput gene to knowledge mapping through massive integration of public sequencing data.