bioinformatics-pipeline topic
bacalhau
Compute over Data framework for public, transparent, and optionally verifiable computation
kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
ASAP
ASAP : Automated Single-cell Analysis Pipeline
socru
Order and orientation of complete bacterial genomes
OmicSelector
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughpu...
rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
drug-sniffer
Sniffing out new drugs
lsf
Snakemake profile for running jobs on an LSF cluster
daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0....
eoulsan
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)