bioinformatics-pipeline topic
pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
nf-core-rnaseq
See the main fork of this repository here >>>
fyrd
Submit functions and shell scripts to torque and slurm clusters or local machines using python.
snATAC
<<------ Use SnapATAC!!
assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
iva
de novo virus assembler of Illumina paired reads
mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
plasmidtron
Assembling the cause of phenotypes and genotypes from NGS data